Merge cac2c8c1fe into 84c6914a9b

Made _freeze directory exclusion optional

C++.gitignore

@@ -49,14 +49,14 @@ CMakeFiles/
 CMakeCache.txt
 cmake_install.cmake
 Makefile
-install_manifest.txt
+install_manifest.txt 
 compile_commands.json
 
 # Temporary files
-*.tmp
-*.log
-*.bak
-*.swp
+*.tmp 
+*.log 
+*.bak 
+*.swp 
 
 # vcpkg
 vcpkg_installed/
@@ -66,4 +66,4 @@ vcpkg_installed/
 
 # test output & cache
 Testing/
-.cache/
+.cache/

Global/macOS.gitignore

@@ -1,6 +1,5 @@
 # General
 .DS_Store
-.localized
 __MACOSX/
 .AppleDouble
 .LSOverride

Maven.gitignore

@@ -7,7 +7,7 @@ release.properties
 dependency-reduced-pom.xml
 buildNumber.properties
 .mvn/timing.properties
-# https://maven.apache.org/tools/wrapper/#Usage_with_or_without_Binary_JAR
+# https://maven.apache.org/wrapper/#usage-without-binary-jar
 .mvn/wrapper/maven-wrapper.jar
 
 # Eclipse m2e generated files

Nix.gitignore

@@ -4,6 +4,3 @@ result-*
 
 # Ignore automatically generated direnv output
 .direnv
-
-# Ignore NixOS interactive test driver history
-**/.nixos-test-history

R.gitignore

@@ -20,6 +20,7 @@
 
 # RStudio files
 .Rproj.user/
+.Rbuildignore
 
 # produced vignettes
 vignettes/*.html
@@ -28,7 +29,7 @@ vignettes/*.pdf
 # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
 .httr-oauth
 
-# knitr and R markdown default cache directories
+# Quarto, knitr and R markdown default cache directories
 *_cache/
 /cache/
 
@@ -47,3 +48,21 @@ po/*~
 
 # RStudio Connect folder
 rsconnect/
+
+# renv dependency management
+renv/
+.renvignore
+!renv/activate.R
+
+# Quarto 
+.quarto/
+/_site/
+/_book/
+/_output/
+*_files/
+/_extensions/
+/_*.local
+
+# **Optional**
+# Depends on if you need others to reproduce your computational environment (https://quarto.org/docs/projects/code-execution.html#using-freeze)
+#/_freeze/

TeX.gitignore

@@ -75,11 +75,6 @@ acs-*.bib
 # comment
 *.cut
 
-# context
-*.tuc
-*.tui
-*.tuo
-
 # cprotect
 *.cpt